Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs756352 chr1:31799868 A/C 8.25E-6 494 22.87 31.28 30.93 KM Plot
PRAD rs75656642 chr1:202694109 A/C 9.91E-6 493 30.93 29.5 27.92 KM Plot
PRAD rs75657991 chr5:154181996 T/G 1.03E-8 490 30.27 32.85 20.47 KM Plot
PRAD rs7567313 chr2:107441568 G/C 3.23E-5 492 30.93 30.27 32.63 KM Plot
PRAD rs75677081 chr5:154183542 C/T 0 493 30.2 35.57 4.87 KM Plot
PRAD rs75685042 chr12:9469965 G/A 0 486 31.28 24.93 4.87 KM Plot
PRAD rs7568705 chr2:239081808 C/T 1.86E-5 479 32.3 28.27 28.67 KM Plot
PRAD rs75717040 chr1:93795344 G/A 3.62E-6 494 31.3 28.13 18.97 KM Plot
PRAD rs7577816 chr2:47156455 G/C 6.41E-6 492 30.8 32.4 36.85 KM Plot
PRAD rs75782786 chr6:43320055 C/A 5.07E-10 485 31.27 28.57 44.3 KM Plot
PRAD rs75793404 chr9:72843172 C/T 1.73E-5 493 30.8 31.35 22.45 KM Plot
PRAD rs7579662 chr2:161915810 G/A 3.88E-5 493 29.43 32.13 29.68 KM Plot
PRAD rs75812775 chr12:728564 C/T 0.000148 490 31.33 28.13 22.67 KM Plot
PRAD rs75831238 chr5:154224763 C/T 8.84E-9 493 30.2 33.07 20.47 KM Plot
PRAD rs75852281 chr11:129984141 G/A 2.25E-6 489 30.93 30.47 22.8 KM Plot